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Microglia Activation State Markers

This interactive graphic lists some of the most commonly used M1 microglia markers including iNOS, COX-2, IL-6, B7-2/CD86, and MHC class II molecules. Clicking on a marker will take you to the R&D Systems product selection for researching that molecule. Clicking on a molecule that is designated by (novusbio.com) will take you to the Novus Biologicals’ website and their antibody offerings for that protein. Use the buttons below to see markers associated with different activated microglia phenotypes, or view the markers that are used to identify steady-state microglia.

Property title
Steady-State Microglia
Steady-State Microglia
Stimuli
Stimuli
GM-CSF
GM-CSF
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IFN-gamma
IFN-gamma
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IL-1 beta/IL-1F2
IL-1 beta/IL-1F2
IL-6
IL-6
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TNF-alpha
TNF-alpha
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M1 Microglia
M1 Microglia
Intracellular Markers
Intracellular Markers
COX-2
COX-2
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iNOS
iNOS
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Cell Surface Markers
Cell Surface Markers
B7-1/CD80
B7-1/CD80
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B7-2/CD86
B7-2/CD86
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CD36/SR-B3
CD36/SR-B3
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CD40/TNFRSF5
CD40/TNFRSF5
CD68/SR-D1
CD68/SR-D1
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Fc gamma RII/CD32
Fc gamma RII/CD32
Fc gamma RIII/CD16
Fc gamma RIII/CD16
HLA-DR
HLA-DR
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MHC class II (I-A/I-E)
MHC class II (I-A/I-E)
Secreted Factors
Secreted Factors
CCL2/MCP-1
CCL2/MCP-1
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CCL3/MIP-1 alpha
CCL3/MIP-1 alpha
CCL4/MIP-1 beta
CCL4/MIP-1 beta
CCL5/RANTES
CCL5/RANTES
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CCL8/MCP-2
CCL8/MCP-2
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CCL11/Eotaxin
CCL11/Eotaxin
CCL12/MCP-5
CCL12/MCP-5
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CCL15/MIP-1 delta/LKN-1
CCL15/MIP-1 delta/LKN-1
CCL19/MIP-3 beta
CCL19/MIP-3 beta
CCL20/MIP-3 alpha
CCL20/MIP-3 alpha
CX3CL1/Fractalkine
CX3CL1/Fractalkine
CXCL1/GRO alpha/KC/CINC-1
CXCL1/GRO alpha/KC/CINC-1
CXCL9/MIG
CXCL9/MIG
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CXCL10/IP-10/CRG-2
CXCL10/IP-10/CRG-2
CXCL11/I-TAC
CXCL11/I-TAC
CXCL13/BLC/BCA-1
CXCL13/BLC/BCA-1
IFN-gamma
IFN-gamma
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IL-1 beta/IL-1F2
IL-1 beta/IL-1F2
IL-2
IL-2
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IL-6
IL-6
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IL-12
IL-12
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IL-15
IL-15
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IL-17/IL-17A
IL-17/IL-17A
IL-18/IL-1F4
IL-18/IL-1F4
IL-23
IL-23
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MFG-E8
MFG-E8
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MMP-3
MMP-3
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MMP-9
MMP-9
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NO
NO
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TNF-alpha
TNF-alpha
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Overview

Microglia, the predominate immune cells in the central nervous system (CNS), are the cellular mediators of neuroinflammation. They exist in a quiescent state in healthy CNS tissue and become activated following an insult or infection. Reactive microglia can acquire different phenotypes depending on the activating stimulus encountered. M1 microglia are the “classically” activated microglia that initiate a proinflammatory response. Microglia polarize to the M1 phenotype upon exposure to proinflammatory cytokines, such as IL-1 beta, IL-6, IFN-gamma, and TNF-alpha, and cellular and bacterial debris. These cells, in turn, produce additional pro-inflammatory cytokines and chemokines, redox molecules, and antigen-presenting molecules in order to eliminate the foreign pathogen and facilitate an adaptive immune response.

Data Examples

IL-1 beta in Rat M1 Microglia. Isolated rat microglia were polarized to the M1 phenotype using Recombinant Rat IFN-gamma (R&D Systems, Catalog # 585-IF) and Recombinant Rat TNF-alpha (R&D Systems, Catalog # 510-RT). IL-1 beta, also called IL-1F2, was then detected in the immersion-fixed rat M1 microglia using a Goat Anti-Rat IL-1 beta/IL-1F2 Antigen Affinity-Purified Polyclonal Antibody (R&D Systems, Catalog # AF-501). The cells were stained using the NorthernLights 557-Conjugated Donkey Anti-Goat IgG Secondary Antibody (R&D Systems, Catalog # NL001; red). Nuclei were counterstained with DAPI (blue). The cells were co-stained using a Rabbit Anti-Human/Mouse/Rat AIF-1/Iba1 Antigen Affinity-Purified Polyclonal Antibody (Novus Biologicals, Catalog # NBP2-16908) and the NorthernLights 493-Conjugated Donkey Anti-Rabbit IgG Secondary Antibody (R&D Systems, Catalog # NL006; green).